https://nova.newcastle.edu.au/vital/access/ /manager/Index ${session.getAttribute("locale")} 5 Multi-trait genome-wide association study identifies a novel endometrial cancer risk locus that associates with testosterone levels https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:50960 Wed 28 Feb 2024 15:22:37 AEDT ]]> The Future of Biomarkers in Veterinary Medicine: Emerging Approaches and Associated Challenges https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:52876 Wed 28 Feb 2024 11:01:07 AEDT ]]> Cancer proteomics and the elusive diagnostic biomarkers https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:46956 Wed 19 Jul 2023 14:21:24 AEST ]]> The electronic primaries: predicting the U.S. presidency using feature selection with safe data deduction https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:2982 Wed 11 Apr 2018 11:06:16 AEST ]]> Position statement part one: immune function and exercise https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:14499 Wed 11 Apr 2018 10:21:55 AEST ]]> Transgenerational inheritance: how impacts to the epigenetic and genetic information of parents affect offspring health https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:38138 Wed 04 Aug 2021 15:42:40 AEST ]]> Combined burden and functional impact tests for cancer driver discovery using DriverPower https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:55011 Wed 03 Apr 2024 10:12:43 AEDT ]]> High-level nitrofurantoin resistance in a clinical isolate of Klebsiella pneumoniae: a comparative genomics and metabolomics analysis https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:55147 256 mg/L) revealed modified expression of several genes related to membrane transport (porin ompK36 and efflux pump regulator oqxR) and nitroreductase activity (ribC and nfsB, involved in nitrofurantoin reduction). Untargeted metabolomics analysis of total metabolites extracted at 1 and 4 h post-nitrofurantoin treatment revealed that exposure to the drug caused a delayed effect on the metabolome which was most pronounced after 4 h. Pathway enrichment analysis illustrated that several complex interrelated metabolic pathways related to nitrofurantoin bacterial killing (aminoacyl-tRNA biosynthesis, purine metabolism, central carbohydrate metabolism, and pantothenate and CoA biosynthesis) and the development of nitrofurantoin resistance (riboflavin metabolism) were significantly perturbed. This study highlights for the first time the key role of efflux pump regulator oqxR in nitrofurantoin resistance and reveals global metabolome perturbations in response to nitrofurantoin, in K. pneumoniae.]]> Tue 16 Apr 2024 15:16:15 AEST ]]> The molecular characterisation of the vernalisation response in safflower via the development of genomic and transcriptomic resources https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:28957 Thu 28 Oct 2021 12:37:23 AEDT ]]> Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:26066 Thu 20 Aug 2020 09:19:59 AEST ]]> A genotype-first approach identifies an intellectual disability-overweight syndrome caused by PHIP haploinsufficiency https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:44086 Thu 06 Oct 2022 15:34:32 AEDT ]]> Serine/threonine phosphatases in socioeconomically important parasitic nematodes: prospects as novel drug targets? https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:12352 Sat 24 Mar 2018 08:18:31 AEDT ]]> Proteogenomics: emergence and promise https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:27299 Sat 24 Mar 2018 07:38:31 AEDT ]]> Contrasting genetic architectures of schizophrenia and other complex diseases using fast variance-components analysis https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:23305 Sat 24 Mar 2018 07:16:19 AEDT ]]> Post-meiotic DNA damage in spermatoza and consequences to offspring https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:32163 Mon 23 Sep 2019 13:47:08 AEST ]]> Synergistic apoptotic effect of miR-183-5p and Polo-Like kinase 1 inhibitor NMS-P937 in breast cancer cells https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:47564 Mon 23 Jan 2023 13:18:30 AEDT ]]> Draft genome sequence of potato crop bacterial isolates and nanoparticles-intervention for the induction of secondary metabolites biosynthesis https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:53926 Mon 22 Jan 2024 16:49:22 AEDT ]]> OTX2 duplications: A recurrent cause of oculo-auriculo-vertebral spectrum https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:53051 Fri 17 Nov 2023 11:59:45 AEDT ]]> Transaap: An automated annotation pipeline for membrane transporter prediction in bacterial genomes https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:53066 Fri 17 Nov 2023 11:52:33 AEDT ]]> Precision oncology in surgery: patient selection for operable pancreatic cancer https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:46225 Fri 09 Dec 2022 14:48:55 AEDT ]]> De novo variants in CNOT1, a central component of the CCR4-NOT complex involved in gene expression and RNA and protein stability, cause neurodevelopmental delay https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:39078 de novo CNOT1 variants, including missense, splice site, and nonsense variants, who present with a clinical spectrum of intellectual disability, motor delay, speech delay, seizures, hypotonia, and behavioral problems. To link CNOT1 dysfunction to the neurodevelopmental phenotype observed, we generated variant-specific Drosophila models, which showed learning and memory defects upon CNOT1 knockdown. Introduction of human wild-type CNOT1 was able to rescue this phenotype, whereas mutants could not or only partially, supporting our hypothesis that CNOT1 impairment results in neurodevelopmental delay. Furthermore, the genetic interaction with autism-spectrum genes, such as ASH1L, DYRK1A, MED13, and SHANK3, was impaired in our Drosophila models. Molecular characterization of CNOT1 variants revealed normal CNOT1 expression levels, with both mutant and wild-type alleles expressed at similar levels. Analysis of protein-protein interactions with other members indicated that the CCR4-NOT complex remained intact. An integrated omics approach of patient-derived genomics and transcriptomics data suggested only minimal effects on endonucleolytic nonsense-mediated mRNA decay components, suggesting that de novo CNOT1 variants are likely haploinsufficient hypomorph or neomorph, rather than dominant negative. In summary, we provide strong evidence that de novo CNOT1 variants cause neurodevelopmental delay with a wide range of additional co-morbidities. Whereas the underlying pathophysiological mechanism warrants further analysis, our data demonstrate an essential and central role of the CCR4-NOT complex in human brain development.]]> Fri 06 May 2022 12:37:33 AEST ]]> Whole-blood methylation signatures are associated with and accurately classify multiple sclerosis disease severity https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:52991 Fri 03 Nov 2023 16:05:35 AEDT ]]> Increasing the PACE of characterising novel transporters by functional genomics https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:42774 Fri 02 Sep 2022 11:00:23 AEST ]]> Human Genetics Society of Australasia Position Statement: Use of Polygenic Scores in Clinical Practice and Population Health https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:51355 Fri 01 Sep 2023 13:43:26 AEST ]]>